README

Content

• Biobroker
  • Infrastructure summary
  • How-to
    • Install
    • Run
      • Environment variables
    • Generate documentation
      • Adding a new class
      • Re-creating RST files from scratch
  • Notes for developers

Code documentation

• API
• Authenticator
• Generic
• Input processor
• Metadata entity
• Output processor
• Wrangler

Notebooks

• Submit to biosamples
• Submit your samples validating them against a checklist
• Modifying the source input with a key:value map
• Retrieving a sample
• Updating submitted samples
• Submitting complex metadata